| How can I use NaviCell for data visualization? |
| NaviCell Web Service for Network-based Data Visualization allows mapping
high-througput data (mRNA, microRNA and protein expressions, gene copy
number and mutation profiles, simple gene lists and clinical data) onto
biological network maps, browsable with NaviCell. This can be done from
within NaviCell graphical user interface (GUI) or programmatically using
NaviCell REST API with available Python binding. NaviCell Web Service provides both standard (barplots
and heatmaps) and advanced original (glyphs and map staining) tools for
visualizing omics data of different types simultaneously. All
documentation for using NaviCell Web Service, including a user guide, a
tutorial and several case studies, is available in the "NaviCell Web service" section.
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| How to find the gene or protein of my interest on the map in NaviCell? |
| Scroll through the selection panel that contains the list of all entities of the map including proteins and genes and select your gene or protein. Markers will appear on the map indicating all modifications of the selected gene or protein |
| How to find map modules? |
| Scroll through the selection panel that contains the list of all entities of the map including map modules, select modules of your interest. Markers will appear on the map indicating selected modules. Each module can be visualised in the context of the whole map or individually |
| Where to leave my suggestions? |
| Reply can be lest in the last section of each annotation post in the blog. Access the blog that contains annotation posts clicking on the blog icon (book) in any pop-up bubble on the map. See explanation in the User's Guide |
| I am interested to use the map displayed in NaviCell. Do I have an access to the maps? |
| The maps can be only viewed and commented from the NaviCell. To access the maps files for research needs please contact NaviCell managers. Send Email to: navicell@curie.fr |
