NaviCell Data Visualization Web Service
NaviCell Web Service for Network-based Data Visualization allows mapping high-throughput data (mRNA, microRNA and protein expressions, gene copy number and mutation profiles, simple gene lists and clinical data) onto biological network maps, browsable with NaviCell. This can be done from within NaviCell graphical user interface (GUI) or programmatically using NaviCell REST API with available Python binding (R and Java bindings are in development). NaviCell Web Service provides both standard (barplots and heatmaps) and advanced original (glyphs and map staining) tools for visualizing omics data of different types simultaneously. All documentation for using NaviCell Web Service, including a user guide, a tutorial and several case studies, is available below. Live Example allows playing NaviCell Web Service interface by loading data (TCGA, ovary cancer, transcriptome, genome, mutations, clinical information) automatically and demonstrating all available data visualization tools.
NaviCell Web Service Live Example
User Guide and Tutorial
NaviCell Web Service REST API and bindings
Note: all the code is open-source and is released under the terms of the GNU LGPL license.
- REST API documentation
- Python binding package and data files (template code included)
- Python binding technical documentation
- R NaviCell package (template code included)
- R NaviCell package step-by-step tutorial
- Java NaviCell binding (JNaviCell)