Bonnet E, Viara E, Kuperstein I, Calzone L, Cohen D, Barillot E and Zinovyev A
NaviCell Web Service for network-based data visualization Nucleic Acids Research (2015) doi: 10.1093/nar/gkv450

Kuperstein I, Cohen DPA, Pook S, Viara E, Calzone L, Barillot E and Zinovyev A
NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps. doi:10.1186/1752-0509-7-100

Calzone L, Gelay A, Zinovyev A, Radvanyi F, Barillot E
A comprehensive modular map of molecular interactions in RB/E2F pathway.
Mol Syst Biol (2008) 4: 173. PMID:18319725

Zinovyev A, Viara E, Calzone L, Barillot E
BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
Bioinformatics. 2008 24(6):87. PMID:18024474

Pook S, Vaysseix G, Barillot E
Zomit:biological data visualization and browsing.
Bioinformatics. 1998 4:807. PMID:9918951

Publications using NaviCell

Niarakis A, Bounab Y, Grieco L, Roncagalli R, Hesse AM, Garin J, Malissen B, Daeron M, Thieffry D.
Computational modeling of the main signaling pathways involved in mast cell activation.
Curr Top Microbiol Immunol. 2014;382:69-93. PMID:25116096.

Chanrion M, Kuperstein I, Barrière C, El Marjou F, Cohen D, Vignjevic D, Stimmer L, Paul-Gilloteaux P, Bièche I, Dos Reis Tavares S, Boccia GF, Cacheux W, Meseure D, Fre S, Martignetti L, Legoix-Né P, Girard E, Fetler L, Barillot E, Louvard D, Zinovyev A, Robine S
Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut.
Nature Communications. 2014 Oct 8;5:5005. doi: 10.1038/ncomms6005 PMID: 25295490

Kuperstein I, Grieco L, Cohen D, Thieffry D, Zinovyev A, Barillot E. The shortest path is not the one you know: application of biological network resources in precision oncology research. Mutagenesis, 2015 Mar;30(2):191-204. doi: 10.1093/mutage/geu078. PMID: 25688112

Cohen D, Kuperstein I, Barillot E, Zinovyev A, Calzone L. From a biological hypothesis to the construction of a mathematical model. Methods Mol Biol. 2013;1021:107-25. doi: 10.1007/978-1-62703-450-0_6. PMID: 23715982.

Calzone L, Kuperstein I, Cohen D, Grieco L, Bonnet E, Servant N, Hupé P, Zinovyev A, Barillot E. Biological network modelling and precision medicine in oncology. Bull Cancer. 2014 Jun;101 Suppl 1:S18-21. doi: 10.1684/bdc.2014.1973. PMID: 24966078