Protein ATM map

Identifiers
ataxia telangiectasia mutated
HUGO:ATM HGNC:795 ENTREZ:472 UNIPROT:Q13315 GENECARDS:ATM REACTOME:85553 KEGG:472 ATLASONC:ATM123 WIKI:ATM

Maps_Modules
 emtcellmotility  map
 apoptosis  map
 dnarepair  map
 dnarepair  map
 dnarepair  map
 cellcycle  map
 cellcycle  map
 cellcycle  map
 survival  map

References
DDR by ATM
PMID:23847781
PMID:17303408, PMID:16163361, PMID:15964794
For S-phase checkpoint
PMID:15459660, PMID:12607003, PMID:11877377

ATM|​S1981_pho|​S367_pho|​S1893_pho|​active@default

References
d_re36( dnarepair  map ):
PMID:16332722
Auto-phosphorylation of ATM in response to DNA DSB:
PMID:17303408, PMID:12556884, PMID:16858402
Amplification of ATM auto-phosphorylation by the complex ATM:MRNcomplex:H2AX:MDC1CDK5 phosphorylates and activates ATM
PMID:19151707
d_re32:( dnarepair  map ) PMID:19788416, PMID:9168117, PMID:11804596
d_re33:( dnarepair  map ) PMID:15485915
d_re43:( dnarepair  map ) PMID:16731533
d_re71( dnarepair  map ):
For inactivation of EXO1 by 53BP1-mediated phosphorylation:
PMID:18756267, PMID:15867354
ATM and ATR phosphorylate EXO1 and lead to EXO1 ubiquitination and degradation:
PMID:18048416, PMID:11438669, PMID:20019063
d_re82:( dnarepair  map ) PMID:21376743
d_re97:( dnarepair  map ) PMID:17303408, PMID:16163361, PMID:15964794
d_re110( dnarepair  map ):
Phosphorylation by ATM and ATR at T847, S327
Phosphorylation at S327 by ATM and ATR are essential for shift from A_NHEJ to HR
Phosphorylation by CDC2(CDK1) in cell cycle dep manner to shift from C_NHEJ ot HR at: Ser 267
This phosphorylation allows resection that initiates HR and blocks binding of Ku70/Ku80 complex that initiates C_NHEJ.
PMID:19357644, PMID:15485915, PMID:19490890, PMID:18716619 (for CDK-dep phosph), PMID:20051983
BRCA1 and CtIP interactions make shift from A_NHEJ and C_NHEJ toward HR
Resected DNA in HR is a positive trigger for amplification of the HR pathway (positive loop):
PMID:20051983
Only when CDKs are fully active, this fully activates HR during S and G2 phases:
PMID:18511906, PMID:18716619
d_re115( dnarepair  map ):
PMID:16581787,
For inhibition of S-checkpoint by ATM:
PMID:15175241
Inhibition of Sphase by MRE complex:
PMID:17713585
By CycE*/CDK2: G1/S transition
By CycD*/CDK2/CIp/KIP: checkpoint G1/S
d_re119( dnarepair  map ):
PMID:15175241, PMID:12086603
For inhibition of S-checkpoint by HCLK2/FAAP24/ATR/FANKM complex:
PMID:19282663, PMID:19622404, PMID:18995830
For interaction between SNM1B and ATM to mediate S-phase checkpoint in response to ICL (intra-chromatide lesion):
PMID:18469862
Resected DNA is a triger for activating the S-phase checkpoint and moving from G1 to S to G2:
PMID:20051983, PMID:16805667
For inhibition of S to G2 propagation and activation of S-phase checkpoint by complex PCNA:CtIP:
PMID:19342888
ATR kinase activation mediated by MutSalpha and MutLalpha in response to cytotoxic O6-methylguanine adducts. O6-methylguanine adducts recognized by MutSalpha, MutLalpha and BER pathways performs the repair. ATR/ATRIP S phase arrest is activated:
PMID:16713580
For role of TIM1*/TIPIN in S-phase checkpoint, stalled replication forks stabilisation and DNA repair during S-phase:
PMID:17102137, PMID:17116885, PMID:17296725, PMID:19793801, PMID:17582221
For inhibition of S-phase by ATR/ATRIP/CHEK1/CLSPN/HCLK2* complex:
PMID:19793801, PMID:17384638
For ATR/ATRIP/CHEK1/Tim* S-phase checkpoint
PMID:15798197
Formation of the complex for crosslink-activation of S phase checkpoint. FA core complex activates the reaction to stop S-phase propagaton:
PMID:14988723, PMID:15136767
d_re132:( dnarepair  map ) PMID:19841479, PMID:19793861
d_re148( dnarepair  map ):
PMID:18006705
PMID:18583988
d_re198( dnarepair  map ):
ATM phosphotylates FANCD2 for S-phase checkpoint arrest in responce to IR.
PMID:12086603
d_re408:( dnarepair  map ) PMID:9858600

ATM@default

References
d_re36( dnarepair  map ):
PMID:16332722
Auto-phosphorylation of ATM in response to DNA DSB:
PMID:17303408, PMID:12556884, PMID:16858402
Amplification of ATM auto-phosphorylation by the complex ATM:MRNcomplex:H2AX:MDC1CDK5 phosphorylates and activates ATM
PMID:19151707


Modifications:
In compartment: default
  1. ATM@default map
  2. ATM|​S1981_pho|​S367_pho|​S1893_pho|​active@default map
Participates in complexes:
In compartment: Nucleus
  1. ATM|​S1981_pho|​S367_pho|​S1893_pho:​CTIP*|​emp:​MRE11*:​NBS1*|​S343_pho:​RAD50:​WRN@Nucleus map
In compartment: default
  1. ATM|​S1981_pho|​S367_pho|​S1893_pho:​SNM1B*@default map
  2. ATM|​S1981_pho|​S367_pho|​S1893_pho:​MRE11*:​NBS1*|​S343_pho:​RAD50@default map
  3. ATM|​S1981_pho|​S367_pho|​S1893_pho:​H2AFX|​S139_pho|​ubi:​MDC1|​pho:​MRE11*:​NBS1*|​S343_pho:​RAD50@default map
Participates in reactions:
As Reactant or Product:
  1. ATM|​S1981_pho|​S367_pho|​S1893_pho:​MRE11*:​NBS1*|​S343_pho:​RAD50@default map + CTIP*|​emp@default map + WRN@Nucleus map map ATM|​S1981_pho|​S367_pho|​S1893_pho:​CTIP*|​emp:​MRE11*:​NBS1*|​S343_pho:​RAD50:​WRN@Nucleus map
  2. ATM|​S1981_pho|​S367_pho|​S1893_pho|​active@default map + SNM1B*@default map map ATM|​S1981_pho|​S367_pho|​S1893_pho:​SNM1B*@default map
  3. ATM@default map map ATM|​S1981_pho|​S367_pho|​S1893_pho|​active@default map
  4. ATM|​S1981_pho|​S367_pho|​S1893_pho:​MRE11*:​NBS1*|​S343_pho:​RAD50@default map + H2AFX|​S139_pho|​ubi:​MDC1|​pho@default map map ATM|​S1981_pho|​S367_pho|​S1893_pho:​H2AFX|​S139_pho|​ubi:​MDC1|​pho:​MRE11*:​NBS1*|​S343_pho:​RAD50@default map
  5. ATM|​S1981_pho|​S367_pho|​S1893_pho|​active@default map + MRE11*:​NBS1*|​S343_pho:​RAD50@default map map ATM|​S1981_pho|​S367_pho|​S1893_pho:​MRE11*:​NBS1*|​S343_pho:​RAD50@default map
As Catalyser:
  1. gA_NHEJ_DNA_st1*@Nucleus map map gA_NHEJ_DNA_st2*@Nucleus map
  2. CTIP*|​emp@default map map CTIP*|​emp|​S372_pho|​T847_pho|​S267_pho@default map
  3. gHR_DNA_st1*@Nucleus map map gHR_DNA_st2*@Nucleus map
  4. G1 phase@default map map S phase@default map
  5. S phase@default map map G2 phase@default map
  6. G2 phase@default map map M phase@default map
  7. SMARCAL1@default map map SMARCAL1|​pho@default map
  8. MDC1@default map map MDC1|​pho@default map
  9. FANCD2@default map map FANCD2|​S222_pho@default map
  10. ABL1@default map map ABL1|​S465_pho|​active@default map
  11. CHEK1@default map map CHEK1|​pho|​active@default map
  12. ATM@default map map ATM|​S1981_pho|​S367_pho|​S1893_pho|​active@default map
  13. CTBP*@default map map CTBP*|​S181_pho|​T179_pho|​S185_pho@default map
  14. BRCA1@default map map BRCA1|​S988_pho|​S1387_pho|​S1423_pho|​S1497_pho|​S1524_pho|​active@default map
  15. PARP1@Nucleus map map PARP1|​PolyADPribose_unk|​pho@Nucleus map
  16. RPA2@default map map RPA2|​pho@default map
  17. SMC1*@default map map SMC1*|​S957_pho|​S966_pho@default map
  18. SMC3@default map map SMC3|​S1083_pho@default map
  19. SCC1*:​SMC1*:​SMC3:​STAG*@default map map SCC1*|​ATM-dep._pho:​SMC1*|​S957_pho:​SMC3|​S1083_pho:​STAG*@default map
  20. MDM2@default map map MDM2|​pho@default map
  21. SIAH*@default map map SIAH*|​pho@default map
  22. PARP2@default map map PARP2|​unk|​pho@default map
  23. EXO1@default map map EXO1|​S692_pho|​S372_pho|​S567_pho|​S587_pho@default map
  24. CHEK2@default map map CHEK2|​pho|​active@default map
  25. Ku70*@default map + Ku80*@default map map Ku70*:​Ku80*@Nucleus map
  26. DNA-PK*@default map map DNA-PK*|​pho@default map
  27. H2AFX@default map map H2AFX|​S139_pho@default map